Summary
Overview
Work History
Education
Skills
Accomplishments
Research Interest
Generic

ELIF KARLIK

Troisdorf

Summary

Talented Postdoctoral Research Fellow dedicated to research in Plant Genetics and Crop Improvement with extensive experience in leading and coordinating research projects, collaborating across interdisciplinary cross-functional teams and utilizing strong communication skills. Detail-driven professional contributing results and valuable insight via data analytics and methods to the organization. Seeing and interpreting the connections between results. Enjoy designing and executing projects, mentoring and publishing. Managed challenging environments with fast-paced challenges and deadlines.

Overview

12
12
years of professional experience

Work History

Assistant Professor, 2020- 2022

Istinye University
Istanbul
04.2020 - 09.2022
  • Managed multiple projects and inter departmental collaborations and met timelines based on priority.
  • Supervised undergrad students, and assisted them with validating the accuracy and efficiency of their methods and tools.
  • Collected and analyzed data to maintain records of research findings with analysis and evaluation of results.
  • Searched pertinent scientific literature to support efforts with empirical data.
  • Presented findings at research conferences.

Project#1 “Studies on Development of Retrotransposon-Based Short-Term Mutagen/Carcinogen Tests in Plant Material”

  • Investigating of mutagenicity potentials of Metformin and dichlorprop methyl ester via screening retrotransposons movements.

Project#2 “Examination of the Pathological Effects of Marmara Sea Mucilage”

  • Examination of marine pollution on human health

Project#3 “Comparative Retrotransposon Analysis in Wheat”

  • Aimed to reveal the evolutionary information based on the comparison retrotransposon movements between bread and einkorn wheat.

Teaching activities:

  • Shifted between informal and formal methods of teaching to create multi-layered web of learning incorporating experiments, practical activities, discussions, and projects into lessons.
  • Revised course objectives, course materials, instructional and assessment strategies for Basic Genetics, Molecular Genetics, Molecular Evolution, Genetic Engineering and Biotechnology, Nutrigenetics courses.
  • Mentored fellows, residents, students and volunteer workers to execute assigned tasks with validity.
  • Contributed to planning appropriate and engaging lessons for both classroom and distance learning applications.
  • Proctored exams and provided remediation for learning improvement goals.
    Evaluated and supervised student activities and performance levels to provide reports on academic progress.

Teaching Assistant

Istinye University
Istanbul
03.2019 - 04.2020
  • Partnered with teacher to plan and implement lessons following school's curriculum, goals, and objectives.
  • Established positive relationships with students.
  • Supported classroom activities, tutoring, and reviewing work.
  • Provided one-on-one assistance and tutoring to students requiring additional help.
  • Conducted independent researches and develop to attain short and long-term objectives.

Project 1# "Investigating retrotransposon patterns in barley via Fluorescence in situ hybridization (FISH)"

Project 2# " Analysis of endogenous retrovirus HERV-K6 and
HERV-K11 polymorphisms' in head and neck squamous cell carcinoma patients"

Doctoral Research Fellow

Istanbul University
Istanbul
09.2012 - 05.2018

Thesis Project: Investigations on Long Non-coding RNAs in Barley (Hordeum vulgare L.)

  • Designed research projects and established clear trajectories to achieve intended information.
  • Performed both physiological and molecular analysis to reveal stress relation between lncRNAs and salt stress
  • Conducted germination, water, total protein and proline content analysis
  • Performed RT-PCR analysis to determine gene expression of lncRNAs under stress conditions
  • Developed alternative approach to NGS technologies for determination of relative expression levels of sense lncRNAs under particular circumstances.
  • Managed project timelines and coordinated research tasks.
  • Wrote paper, edited and published various recognized journals.

Master Research Fellow

Istanbul University
Istanbul
12.2010 - 05.2012

Thesis Project: Virus-Induced Gene Silencing Studies in Barley (Hordeum vulgare L.)

  • Followed best practices and scientific protocol to reach defensible conclusions based on solid evidence.
  • Maintained high levels of confidentiality to protect data quality and project research.
  • Use Virus-induced gene silencing method of investigation to research G-proteins function in depth.
  • Conducted cloning studies of G- proteins
  • Published research in journals.

Education

Ph.D. - Biotechnology

Istanbul University
Istanbul
05.2018

Master of Science - Molecular Biology And Genetics

Istanbul University
Istanbul
05.2012

Bachelor of Science - Molecular Biology And Genetics

Istanbul University
Istanbul
06.2009

Skills

  • Virus Induced Gene Silencing (VIGS)
  • Plant Tissue Culture
  • RNA Biology-Long Non-coding RNAs (stress- related lncRNAs)
  • Cloning
  • Differential Gene Expression Analysis
  • Stress-related Physiological Analysis (Determination of Water, Total soluble protein, and Proline Content)
  • Inter-retrotransposon Amplified Polymorphism (IRAP) Molecular Marker Technique
  • Basic Bioinformatic Analysis (BLAST, Protein Motif Identification, Phylogenetic Tree Construction, Protein-protein Interactions)
  • Food safety- GMO Analysis
  • Confocal Microscopy
  • Fluorescence Microscopy
  • Fluorescent In Situ Hybridization (FISH)

Accomplishments

  • Granting the title of ASSOCIATE PROFFESOR by The Inter-Universities Council of Turkey
  • THE SCIENTIFIC AND TECHNOLOGICAL RESEARCH COUNCIL OF TURKEY (TUBITAK), National Scholarship Programme for MSc Students
  • THE SCIENTIFIC AND TECHNOLOGICAL RESEARCH COUNCIL OF TURKEY (TUBITAK), National Scholarship Programme for PhD Students
  • COST Action CA20110/RNA communication across kingdoms: new mechanisms and strategies in pathogen control (exRNA-PATH) Management Community and Working Group Memberships
  • COST Action CA21157 / European Network for Innovative Woody Plant Cloning (COPYTREE) Working Group Membership
  • COST Action CA21169 / Information, Coding, and Biological Function: the Dynamics of Life (DYNALIFE) Working Group Membership

Research Interest

Plants are being affected by climate changes including droughts, heat waves, cold snaps, and flooding are all regarded as severe threats to crop production as they prevent plant growth and development, causing in yield losses. Plants respond to stress through a complex process that includes changes in physiological and biochemical processes, gene expression, and alterations in the amounts of metabolites and proteins at different developmental stages. My main research effort will focus on recent advances in the use of various traditional and modern biotechnological strategies to understand stress adaptation and tolerance mechanisms including genomics, transcriptomics, metabolomics, proteomics, and so on.

Today's plant science faces a major challenge to achieve the goal of developing climate-resilient crops that can tolerate diverse environmental stresses. To highlight the most recent breakthroughs in plant response, we need the advanced toolkit and technologies that are used to investigate and understand abiotic and biotic stresses and adaptation/tolerance strategies of crops.


My main interest focuses on the following areas:

  • Unraveling the regulatory networks of the stress adaptation mechanisms of plant growth to environmental challenges.
  • Systems biology approaches to study abiotic stress in crop plants.
  • Phenotyping for abiotic stress tolerance in crops.
  • Molecular characterization of RNAs related to crop tolerance to abiotic stresses.
  • Molecular breeding for developing and improving abiotic stress resilience in crops.
  • Development of new strategies to understand stress memory of crops.
  • Crop production in abiotic stress conditions.
ELIF KARLIK