Ivey Sebastian
Dresden
Summary
Passionate Bio-image analyst/ Machine learning Engineer with Bachelors' and Master of Science in Biomedical Engineering with more than 4 years of experience in image and data analysis.
Overview
9
9
years of professional experience
Work History
Bio-Image Analyst
Scionics Computer Innovation GmbH
04.2022 - Current
- Building and designing complex image analysis workflows by developing custom scripts/tools using python
- Training and developing deep learning models to extract quantitative information from the biological images.
- Using a variety of open source tools and commercial software like Arivis (Zeiss), Imaris (Bitplane), ImageJ (Fiji).
Research assistant
KU leuven
09.2020 - 02.2022
- Analysis of high dimensional single cell data from multiplexed immunohistochemistry (mIHC) technique (MILAN) to study cell-cell interactions, define cellular sociology and describe detailed aberrations in tissue architecture, as such gaining much deeper insights in disease states
- Involved in the development of a standard image analysis pipeline protocol for the MILAN images.
Intern (Master thesis)
Fluidda NV
09.2019 - 02.2020
- Detection and segmentation of Idiopathic pulmonary fibrosis from chest CT scans
- Segmentation and quantification of pulmonary Fibrosis in the lungs by developing and training a model using machine learning
- Identification of parameters responsible for distinguishing the fibrosis tissue from the healthy tissue
- Training Deep learning networks.
Intern
OEN India Ltd.
05.2016 - 06.2016
- Gained knowledge and experience in the field of manufacturing as well as the quality assurance.
Education
Master of Science -
FH University of Applied Sciences
05.2020
B.Tech - undefined
Govt. Model Engineering college
04.2017
Skills
- Python
- Image Processing
- Machine Learning
- ImageJ
- Arivis
- Huygens
- Imaris
- Pytorch
- Keras
- Bioinformatics
- R
- Microsoft Office
- Matlab
Languages
English
German
Personal Information
Title: BIO-IMAGE ANALYST/MACHINE LEARNING ENGINEER
Publications
- Slembrouck, Laurence & Sebas3an, Ivey & et.al. (2021). 51P The development of a predic3ve model for risk results of the 70-gene signature. Annals of Oncology. 32. S42-S43. 10.1016/j.annonc.2021.03.065., Slembrouck, Laurence & Sebas3an, Ivey & et.al., Annals of Oncology, 32, S42-S43, 10.1016/j.annonc.2021.03.065
- Messiaen, Julie & Nazari, Pouya & et.al. (2021). PATH-21. THE SINGLE-CELL PATHOLOGY LANDSCAPE OF PEDIATRIC GLIOMA. Neuro-Oncology. 23. vi119-vi119. 10.1093/neuonc/noab196.473., Messiaen, Julie & Nazari, Pouya & et.al, Neuro-Oncology, 23, vi119-vi119, 10.1093/neuonc/noab196.473
- Messiaen, Julie & Antoranz, Asier. & et.al (2022). HGG-56. Spa3al mapping of the tumor micro-environment in pediatric glioma. Neuro-Oncology. 24. i74-i74. 10.1093/neuonc/noac079.271., Messiaen, Julie & Antoranz, Asier. & et.al, Neuro-Oncology, 24, i74-i74, 10.1093/neuonc/noac079.271
- Vanmechelen, Maxime & Beckervordersandforth, Jan & et.al. (2021). PATH20. SPATIAL MAPPING OF THERAPY-INDUCED, PATHOLOGICAL CHANGES IN GLIOBLASTOMA AT SINGLE-CELL RESOLUTION. Neuro-Oncology. 23. vi119-vi119. 10.1093/neuonc/noab196.472., Vanmechelen, Maxime & Beckervordersandforth, Jan & et.al, Neuro-Oncology, 23, vi119-vi119, 10.1093/neuonc/noab196.472
References
References available upon request
Hobbies and Interests
- Dancing
- Reading
- Cycling
- Yoga
Projects
Predictive model for risk results of the 70-gene signatures, Leuven ( 11/2020 - 04/2021)
Created a model specifically aimed at predic3ng 70-gene signature MammaPrint® (MP) risk results to better select patients for multi-gene signature testing. The model was developed based on the combination of clinical-pathological features and the outcomes of existing statistical predictive models as input features. The model accuracy was comparable to that of the existing models.
Registration of multiplexed immunohistochemistry images, Leuven (09/2020 - 08/2021)
Developed a pipeline to align/register multiplexed images from different iterations by comparing the efficiency and performance of various registration algorithms.
BioKey, Leuven ( 12/2020 - 02/2022)
Understand the immunotherapy induced changes in the tumor microenvironment, registration, segmentation, feature extraction, clustering, tissue reconstruction and neighborhood analysis.
Airway obstruction detector, Cochin (06/2016 - 04/2017)
Airway obstruction detector is a low-cost, repeat use spirometer prototype which is an android application that enables to check the abnormalities in the air column. Android programming.
V-CHECK, Cochin (11/2015 - 04/2016)
V-CHECK is a portable commercial device that we made to check the vital parameters of the body. Heart rate, temperature and oxygen saturation pressure are the parameters measured. Device operates by the insertion of a coin.
Details
Dresden, +4917674725603, iveysebastian95@gmail.com
Timeline
Bio-Image Analyst
Scionics Computer Innovation GmbH
04.2022 - Current
Research assistant
KU leuven
09.2020 - 02.2022
Intern (Master thesis)
Fluidda NV
09.2019 - 02.2020
Intern
OEN India Ltd.
05.2016 - 06.2016
B.Tech - undefined
Govt. Model Engineering college
Master of Science -
FH University of Applied Sciences
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