Summary
Overview
Work History
Education
Skills
Websites
Selected Conference Presentations
Specialized Training
Technical And Language Skills
Awards
Publications
Leadership And Mentoring Experience
Timeline
Generic

Naama Hirsch

PhD, Molecular Biologist
Freiburg im Breisgau

Summary

Molecular biologist with over 10 years of experience in chromatin regulation, transcriptional dynamics, and epigenetics. Skilled in mammalian cell culture, RNA biology, and next-generation sequencing (NGS) methodologies. Strong interdisciplinary collaborator with extensive experience working with bioinformaticians to analyze transcriptomic and epigenomic data. Proven ability to lead projects, mentor students, and drive research initiatives. Looking to apply expertise in RNA regulation and functional genomics in an industry setting, with a keen interest in expanding into siRNA-based therapeutics.

Overview

13
13
years of professional experience
10
10
years of post-secondary education

Work History

Leadership & Mentoring Experience

MPI-IE
Freiburg
09.2021 - 03.2025
  • Supervised and trained Bachelor's, Master's and PhD students in molecular biology, genomics, and experimental design, towards their thesis
  • Led collaborative projects bridging wet-lab research and computational analysis for transcriptomic based projects
  • Experienced in managing research teams and coordinating interdisciplinary projects

Postdoctoral Researcher

Max Planck Institute for Immunobiology and Epigenetics
Freiburg
09.2021 - 03.2025
  • Investigated the role of MSL3 in mammalian systems, including its impact on transcriptional regulation and neurodevelopmental disorders
  • Studied epigenetic regulation of X-chromosome inactivation (XCI) escapees, employing RNA-Seq, ChIP-Seq, and functional genomics approaches
  • Gained experience with siRNA knockdowns as part of broader transcriptomic studies, working closely with computational biologists for data analysis
  • Extensive expertise in mammalian cell culture (immortalized, primary, and iPSC-derived cells) and molecular biology techniques
  • Led research projects, collaborated with interdisciplinary teams, and supervised students in experimental design and data interpretation

PhD in Life Sciences

Ben-Gurion University
Be'er-Sheva
10.2016 - 07.2021
  • Investigated the role of HDAC9 in TWIST1 transcription regulation during limb and craniofacial development
  • Applied NGS techniques, including RNA-Seq and ATAC-Seq, integrating functional genomics with developmental biology
  • Developed zebrafish models and employed CRISPR-based genome editing for enhancer studies
  • Supervised multiple Bachelor's thesis students, fostering a collaborative research environment

M.Sc. in Life Sciences

Ben-Gurion University
Be'er-Sheva
10.2014 - 10.2016
  • Identified and characterized regulatory enhancers of TWIST1 in mammalian systems
  • Conducted molecular cloning, CRISPR assays, and chromatin interaction experiments
  • Trained undergraduate students in experimental techniques and data analysis

B.Sc. in Life Sciences

Ben-Gurion University
Be'er-Sheva
10.2011 - 10.2014
  • Undergraduate research focused on microglia cell function in brain development
  • Gained hands-on experience in zebrafish models and advanced microscopy techniques

Education

Ph.D. - Life Sciences

Ben-Gurion University
Be'er-Sheva, Israel
10.2016 - 07.2021

Master of Science - Life Sciences

Ben-Gurion University
Be'er-Sheva, Israel
10.2014 - 09.2016

Bachelor of Science - Life Sciences

Ben-Gurion University
Be'er-Sheva, Israel
10.2011 - 09.2014

Skills

  • Mammalian cell culture

  • RNA biology

  • siRNA knockdowns

Transcriptomics

  • NGS techniques

  • RNA-Seq

  • ChIP-Seq

  • ATAC-Seq

  • Epigenomics

  • CRISPR genome editing

  • super-resolution microscopy

  • fresh-frozen tissue handling

  • collaboration with bioinformaticians

  • large-scale data analysis

Scientific writing

Project management

Selected Conference Presentations

  • Hirsch N., Akhtar A. Characterizing the regulatory mechanisms underlying MSL3 syndrome. 6th Epigenetics Meeting, Freiburg, Germany (2022).
  • Hirsch N., Birnbaum RY. Deletion of HDAC9 protein coding exons and its impact on TWIST1 regulation. Keystone Symposia, Denver, USA (2020).
  • Hirsch N., Birnbaum RY. Unraveling the transcriptional regulation of TWIST1 in limb development. 42nd FEBS Conference, Jerusalem, Israel (2017).

Specialized Training

  • Career Building Program - Max Planck Society, Berlin, Germany (2024)
  • FELASA Laboratory Animal Course - Goethe University, Frankfurt, Germany (2021)
  • Academic Teaching Workshop - Ben-Gurion University, Israel (2014)

Technical And Language Skills

Mammalian cell culture (immortalized, primary, iPSC-derived), RNA biology, siRNA knockdowns, transcriptomics, NGS techniques: RNA-Seq, ChIP-Seq, ATAC-Seq, Epigenomics, CRISPR genome editing, super-resolution microscopy, FFPE and fresh-frozen tissue handling, Collaboration with bioinformaticians for large-scale data analysis, Native, Highly proficient, Basic proficiency

Awards

  • EMBO Fellowship Certificate - Acknowledgement of excellence (2021)
  • National Fellowship (Israel) for ESHG Conference (2021)
  • Best Talk Award - GRC Graduate Students Seminar, Hong Kong (2019)
  • Zin Negev Mid-way Scholarship for Outstanding Doctoral Students (2019)
  • Best Poster Award - Ageing and Epigenetics Meeting (2018)
  • High-Tech, Bio-Tech, and Chemo-Tech Scholarship (2016)

Publications

  • Foertsch A., Hirsch N., et al. Stage-specific epigenetic gene priming by the MSL complex orchestrates neurogenesis. In preparation.
  • Sun Y., (…), Hirsch N., (…) et al. MSL2 ensures biallelic gene expression in mammals. Nature 624, 173-181 (2023).
  • Hirsch N., et al. HDAC9 structural variants disrupting TWIST1 transcriptional regulation lead to craniofacial and limb malformations. Genome Res. 32(7):1242-1253 (2022).
  • Hirsch N., et al. Unraveling the transcriptional regulation of TWIST1 in limb development. PLoS Genetics 14(10): e1007738 (2018).
  • Hirsch N., Birnbaum RY. Dual function of DNA sequences: Protein-coding sequences function as transcriptional enhancers. Perspect Biol Med. 58(2):182-95 (2015).

Leadership And Mentoring Experience

  • Supervised and trained Bachelor's and Master's students in molecular biology, genomics, and experimental design.
  • Led collaborative projects bridging wet-lab research and computational analysis.
  • Experienced in managing research teams and coordinating interdisciplinary projects.

Timeline

Leadership & Mentoring Experience

MPI-IE
09.2021 - 03.2025

Postdoctoral Researcher

Max Planck Institute for Immunobiology and Epigenetics
09.2021 - 03.2025

PhD in Life Sciences

Ben-Gurion University
10.2016 - 07.2021

Ph.D. - Life Sciences

Ben-Gurion University
10.2016 - 07.2021

M.Sc. in Life Sciences

Ben-Gurion University
10.2014 - 10.2016

Master of Science - Life Sciences

Ben-Gurion University
10.2014 - 09.2016

B.Sc. in Life Sciences

Ben-Gurion University
10.2011 - 10.2014

Bachelor of Science - Life Sciences

Ben-Gurion University
10.2011 - 09.2014
Naama HirschPhD, Molecular Biologist